PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03208.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 341aa    MW: 36633.8 Da    PI: 5.8109
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03208.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.15.5e-2784171271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr+++++   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Pahal.I03208.1  84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWRG 171
                     789********...*****999************************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.8E-1227340IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.1E-4479177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.3E-3883171IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.6E-2585171IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-1986172IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.38E-41176279IPR014889Transcription factor DP, C-terminal
SMARTSM011382.8E-79178338IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-40178288No hitNo description
PfamPF087811.7E-41179312IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSGAGPSGG PANSASTGAG GGSPSDRGGP APSASASVST PASESTVARR LNGLDLQADD  60
APSSQPAVSK KKKRGARAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD  120
PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI  180
EELKTEIVGL KGRIDKKSAY LQDLQDQYVS LQNLVQRNEQ LYGSGDAPSG GVALPFILVQ  240
TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDSFVLKAMG LSGKEETDGT QTPVANGGEC  300
SSTPNNYWHQ SPQPARPRGV RLANSPPIPG ILKGRVKHEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3477176193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365660.0BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-129DPB_ARATH; Transcription factor-like protein DPB
TrEMBLK4AC690.0K4AC69_SETIT; Uncharacterized protein
STRINGSi036476m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-123Transcription factor DP